json2gff - Convert JSON to GFF¶
Overview¶
Changed in version 0.3.4: using click instead of argparse
New in version 0.2.6.
This script converts annotations in JSON format that were created using MGKit back into GFF annotations.
mongodb command¶
Annotations converted into MongoDB records with get-gff-info mongodb can be converted back into a GFF file using this command. It can be useful to get a GFF file as output from a query to a MongoDB instance on the command line.
For example:
mongoexport -d db -c test | json2gff mongodb
will convert all the annotations in the database db, collection test to the standard out.